| 2006 Elite Division Brackets | ||
| Bracket 1 Elite | Bracket 2 Elite | |
| Boston Jr. Blues | All-American Prospects | |
| Mass Edge 67’s White | EHG | |
| NorthStar Elite Black | Jr. Teddies | |
| Power Play Hockey Metro | NorthStar Elite White | |
| Bracket 3 Elite | Bracket 4 Elite | |
| CHE Navy | Boston Hockey Club White | |
| Coaches Choice Selects | Coaches Choice Elite | |
| Mass Edge 67’s Black | Rapid Hockey | |
| Roc City Elite Red | The BMG | |
| 2006 Division Brackets | ||
| Bracket 1 | Bracket 2 | |
| Adirondack 46er’s | Grads Hockey Blue | |
| GBL Bruins | Long Island Royals | |
| Ontario Rangers | Roc City Elite Silver | |
| Power Play Hockey Atlantic | Team Real Speed Elite | |
| Bracket 3 | Bracket 4 | |
| CD Cadets | Team Kanaly | |
| DevCo Hockey | Michigan Elite | |
| NS Sharks | N’ Ice Stix Hockey | |
| NH Knights | Top Prospects | |
| Bracket 5 | Bracket 6 | |
| Coaches Choice Black | Buffalo Red Raiders | |
| CWE Red | Everest Hockey Academy | |
| Little Rhody Hockey | Port City Pirates | |
| South Shore Kings | Roc City Elite Black | |
| Bracket 7 | Bracket 8 | |
| Central Hockey Academy | Boston Jr. Whalers Green | |
| Northstar Elite Green | Eels White | |
| Roc City Elite White | Fish Tanks | |
| VR Hockey | Messier Selects | |
| Bracket 9 | Bracket 10 | |
| Boston Jr. Whalers Orange | Eels Black American | |
| CWE Black | IHC Hockey | |
| MI-FL Rebel Selects | Reider Hockey | |
| Power City Bruins | Team New England | |
| Bracket 11 | Bracket 12 | |
| Eels Black National | Boston Knights | |
| H.I.D. Elite | G3 | |
| Pine Creek | Petrowski Hockey Group | |
| SAQ Performance | Townshend Hockey | |
| Bracket 13 | Bracket 14 | |
| Eels Green | Boston Bulls | |
| RI Saints | Mass Avalanche National | |
| Roc City Elite Cream | Nailers Hockey Club | |
| Tropics | Team Real Speed | |
| Bracket 15 | Bracket 16 | |
| Optimum Pro Performance | Atlantic Coast Elite | |
| Mass Attack | Boston Hockey Club Black | |
| Power Play Hockey North | Mass Avalanche American | |
| Prospects Hockey | NE Freezers | |